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GI Tutorials
Tutorial 1: Tour of a Gene Inspector Notebook
Tutorial 2: Editing Sequences
Tutorial 3: Using Analysis Setups
Tutorial 4: Hotlinking Analysis Results
Tutorial 5: Multiple Sequence Alignments
Tutorial 6: Running Summary Analyses
Tutorial 7: Aligning Analysis Objects
Tutorial 8: Customizing Gene Inspector Menus
Tutorial 9: Taking Notes Using Background Text
Tutorial 10: Creating and Using Style Sheets
Tutorial 11: Adding More Analyses to a Setup
Tutorial 12: Appendices - Hiding Large Amounts of Data
Tutorial 13: Customizing and Saving Analysis Setup Suites
Tutorial 14: Using Predefined Analysis Suites
Tutorial 15: Restriction Enzyme Digests
Tutorial 16: Displaying Formatted Sequence Information
Tutorial 17: Testcode - An Interactive Analysis
Tutorial 18: Dot Matrix Analysis - Another Interactive Analysis
Tutorial 19: Using Bookmarks in the GI Notebook
Tutorial 20: Creating Your Own Analysis Tables
Tutorial 21: BLAST Searching
 
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          9. Taking Notes Using Background Text

You can use the Gene Inspector notebook to keep track of analyses and experimental details just as you would use a regular lab notebook.

  1. Open the notebook you saved in Tutorial 7: Aligning Analysis Objects. Click in the background white area outside the output objects and begin typing. You should see text appear in the background in the first available free space. The background text flows around objects and can be used to describe and track experiments within the GI Notebook. It can also be used to discuss analysis results. Type in some descriptive text in this notebook. You can generate several pages of text quickly by typing in a paragraph and then copying and pasting this paragraph back into the notebook.
  2. Choose Notebook Display Set Display Preferences.. . You will see Figure 30. This allows you to specify the way different boundaries are indicated on the GI Notebook page. Set colors for the text border and for the printable area border by pressing the Set button next to the item to be set. These borders will let you see how items are placed on the notebook sheet relative to the borders.

    Figure 30: Set Display Preferences

     

  3. Select an output object and choose Notebook Get Info... . This provides you with information about the particular object. You can enter comments here that you might like to refer back to in the future. Close the Get Info window.
  4. While one of the objects is still selected, look at the Notebook Text Flow submenu. By choosing one of the items from this submenu, it is possible to specify how the background text will flow around or through the selected object(s). Try a few of the options and move the object around on the notebook page to see how the text flows around (or through) the object.
  5. Save the notebook by choosing File Save . You will need the notebook to continue with Tutorial 10: Creating and Using Style Sheets.

This concludes this tutorial. You may quit or continue on to the next tutorial.


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