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GCK
GI Tutorials
Tutorial 1: Tour of a Gene Inspector Notebook
Tutorial 2: Editing Sequences
Tutorial 3: Using Analysis Setups
Tutorial 4: Hotlinking Analysis Results
Tutorial 5: Multiple Sequence Alignments
Tutorial 6: Running Summary Analyses
Tutorial 7: Aligning Analysis Objects
Tutorial 8: Customizing Gene Inspector Menus
Tutorial 9: Taking Notes Using Background Text
Tutorial 10: Creating and Using Style Sheets
Tutorial 11: Adding More Analyses to a Setup
Tutorial 12: Appendices - Hiding Large Amounts of Data
Tutorial 13: Customizing and Saving Analysis Setup Suites
Tutorial 14: Using Predefined Analysis Suites
Tutorial 15: Restriction Enzyme Digests
Tutorial 16: Displaying Formatted Sequence Information
Tutorial 17: Testcode - An Interactive Analysis
Tutorial 18: Dot Matrix Analysis - Another Interactive Analysis
Tutorial 19: Using Bookmarks in the GI Notebook
Tutorial 20: Creating Your Own Analysis Tables
Tutorial 21: BLAST Searching
 
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          14. Using Predefined Analysis Suites
  1. We have provided you with several predefined suites of analyses in the Gene Inspector. These suites provide an easy way to setup a number of common analyses. The predefined suites can be modified or discarded and are meant to serve as an example of how analysis setups can be used.
  2. Choose Analysis Hydropathy Analyses. This analysis suite contains 10 different hydropathy analyses, one using each of the available tables in the popup menu. To use this suite select the input sequence panel and choose the peptide sequence you want to analyze.
  3. After choosing the sequence to be analyzed, press the Run button.
  4. A new notebook will be created and your analyses will be started. While the analyses are running choose Analysis Show Analysis Monitor . This shows you all the analyses that are scheduled to be run and the order in which they will be run. As each one is completed it is removed from the list and the next one in line starts up.
  5. To see that all of the analyses really did run, choose Notebook Reduction Reduce to Fit in Window. This will shrink the "magnification" of the image so that the entire notebook will fit on the screen.
  6. Choose Notebook Notebook Layout... and set the display to be side by side.
  7. While still in reduced mode, move the different analysis output objects to fit on the notebook sheets the way you want them to.
  8. Now choose Notebook Reduction Enlarge To Full Size so that you can view the graphic results.

This concludes this tutorial. You may quit or continue on to the next tutorial. If you choose to continue, close all open windows now.


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